Biologists Identify Genes Controlling Rhythmic Plant Growth

Biologists Identify Genes Controlling Rhythmic Plant Growth

Plant gene discoveries could lead to faster growing, more productive crops

NEW BRUNSWICK, N.J. – A team of biologists from Rutgers University, the University of California-San Diego (UCSD), the Salk Institute for Biological Studies and Oregon State University has identified the genes that enable plants to undergo bursts of rhythmic growth at night and allow them to compete when their leaves are shaded by other plants.

The discovery of the genetic underpinnings of the rhythmic plant movements that enthralled Charles Darwin more than a century ago could eventually allow scientists to design crops that can grow substantially faster and produce more food than the most productive varieties today.

The researchers report in this week’s issue of the journal PLoS Biology that these genes control the complex interplay of plant growth hormones, plant light sensors and circadian rhythms that permit plants to undergo rhythmic growth spurts at specific times of the day or year in response to varying levels of light and other environmental conditions.

Plant Genes
Mustard-plant seedlings glow as the genes that control rhythmic plant growth turn on just before dawn...

“It was known that the circadian clock confers an adaptive advantage to plants in nature, and these findings provide a direct mechanism by which plants optimize their growth by synchronizing hormone signaling with the environment,” said Todd Michael, an assistant professor at Rutgers’ Waksman Institute of Microbiology and School of Environmental and Biological Sciences, and a former postdoctoral fellow at Salk. Michael is first author on the new PLoS paper.

 “What we found is a whole raft of genes that could be the actual molecular switches that define plant growth at the molecular level,” said Steve Kay, dean of the Division of Biological Sciences at UCSD and one of the researchers. “The more we understand about these genetic mechanisms and how they switch on and off plant growth, the better we will be at designing tailor-made crops to increase our production of food and fuel for the world’s rapidly growing population.”

Other coauthors included Howard Hughes Medical Institute investigator Joanne Chory at Salk Institute's Plant Biology Laboratory, UCSD postdoctoral fellows Ghislain Breton and Samuel Hazen, and assistant professor of genome biology

Plant Genes 2
...then fade as the genes turn off in a daily cycle.

Todd Mockler, and graduate student Henry Priest of Oregon State.

How plants grow to maximize their survival in different environments has long fascinated biologists. In 1880, Charles Darwin published The Power of Movement in Plants, one of his lesser-known books in which he describes his studies on the manner by which different types of plants grow and move in response to various stimuli.

While many people might assume that plants grow at a slow and steady rate throughout the day and night, Darwin and others found that they grow in regular nightly spurts, with plant stems elongating fastest in the hours just before dawn.

Why plants have evolved mechanisms to grow rhythmically at night or in the hours just before dawn is a mystery. But a similar interplay of light sensing, plant hormones and circadian rhythms that leads to a pronounced rhythmic growth by plants during certain seasons and when shaded by other plants has a clear survival value.

To determine which genes control these rhythmic patterns of growth, the research team turned to Arabidopsis thaliana, a tiny mustard plant used as a laboratory model by plant geneticists. Because Arabidopsis, like many other plants, grows fastest in the hours before dawn when exposed to day and night cycles of light, the scientists sought to determine which of its genes were being turned on during that period. Using DNA microarray chips, they were able to test thousands of genes at a time to determine which ones were active during that period.

The scientists said disparate genes act together to regulate rhythmic plant growth much like a gate with its hinges controlled by photoreceptors and the biological clock – opening in the predawn hours to allow a wave of multiple plant growth hormones to act within the cells, then closing the gate to put the brakes on plant growth until the next 24-hour cycle.

The scientists also discovered that most of the genes involved in this rhythmic predawn growth have a DNA sequence in common, a master controller that they dubbed the HUD element – for “Hormone Up at Dawn.” This HUD element, they noted, must have a protein that attaches to it that regulates its function.

“We don’t know what that is, because we haven’t found it yet,” Kay said. “Identifying that protein regulator is going to be a key goal for the future because that protein is going to be very, very important for controlling plant growth and yield.”

“It's a very exciting time for biologists,” said Chory of the Salk Institute. “The tools now exist to answer questions about complex processes, such as how plants grow or how human metabolism goes awry.”

The study was supported by grants from the Howard Hughes Medical Institute, National Institutes of Health and National Science Foundation.

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